Shigeki Watanabe PhD
Associate Professor of Cell Biology
Associate Professor of Cell Biology
Biochemistry, Cellular and Molecular Biology Graduate Program
Our research program aims to uncover the cellular, molecular, and biophysical principles that underlie neuronal and synaptic activity. Synapses are the fundamental processing units of the brain, mediating neuronal communication through regulated release of signaling molecules, neurotransmitters, and display remarkable plasticity for information transfer and storage. Their malfunction has been linked to many neurological disorders and neurodegenerative diseases. Thus, mechanistic descriptions of these processes are essential in understanding the physiology of neurons in health and disease.
At its heart, synaptic transmission involves exocytosis of vesicles that contain neurotransmitters and subsequent retrieval of vesicles through endocytosis. Many synaptic proteins have been identified, but how these proteins are organized and regulated in space and time for these membrane trafficking events is not well understood. Our research program aims to bridge this knowledge gap by developing innovative electron microscopy techniques* to probe ultrastructural changes of neurons and molecular organization during synaptic transmission with millisecond resolution. Our observations so far have led to five major findings:
We are now uniquely positioned to build on these advances to dissect the mechanisms that underlie synaptic transmission and plasticity. Our goal is to arrive at a complete molecular and physical description of 1) synaptic vesicle exocytosis, 2) synaptic vesicle endocytosis, 3) axonal plasticity, and 4) glial contribution to synaptic transmission and plasticity.
*Novel approaches
Membrane dynamics. We pioneered the “flash-and-freeze” approach that adds temporal information to electron micrographs (Fig.1). Electron microscopy traditionally only captures a static image of cells. To visualize membrane dynamics, we combined optogenetic stimulation of neurons with high-pressure freezing. By varying the intervals between stimulation and freezing, we can essentially make a “flip-book” of cellular dynamics at a millisecond temporal resolution.
Molecular topology and dynamics. We developed a correlative super-resolution fluorescence microscopy and electron microscopy approach that visualizes proteins in electron micrographs (Fig. 2). We found a method that preserves fluorescence through harsh fixation and plastic embedding. We perform super-resolution and electron microscopy imaging on the same ultrathin sections of tissues and map the molecular topology onto the subcellular structures. This technique can be used to pinpoint the locations of proteins within their subcellular context.