Johns Hopkins School of Medicine

For a full list of publications, please see Google Scholar.

Selected publications:

1. Stouffer KM, Chen C, Kulason S, Xu E, Witter MP, Ceritoglu C, Albert MS, Mori S, Troncoso J, Tward DJ, Miller MI. Early amygdala and ERC atrophy linked to 3D reconstruction of rostral neurofibrillary tau tangle pathology in Alzheimer's disease. (2023) Neuroimage Clin. 38:103374
2. Stouffer KM, Witter MP, Tward DJ, Miller MI (2022)  Projective diffeomorphic mapping of molecular digital pathology with tissue MRI.  Communications Engineering 44 (1), 2731-339
3. Stouffer KM, Trouve A, Kunst M, Ng L, Zeng H, Anant M, Fan J, Kim Y, Chen X, Rue M, Miller MI. Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections. (2024) Nature Communications. 15:3530
4. Clifton K, Anant M, Aihara G, Atta L, Aimiuwu OK, Kebschull JM, Miller MI, Tward D, Fan J, STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping (2023) Nature Communications 14(1) 8123
5. Younes L, Albert M, Moghekar A, Soldan A, Pettigrew C, Miller MI (2019) Identifying changepoints in biomarkers during the preclinical phase of Alzheimer’s disease. Front Aging Neurosci 11:74
6. Tang X, Ross CA, Johnson H, Paulsen JS, Younes L, Albin RL, Ratnanather JT, Miller MI (2019) Regional subcortical shape analysis in premanifest Huntington’s disease. Hum Brain Mapp 40(5):1419-1433.
7. Kulason S, Tward DJ, Brown T, Sicat CS, Liu C-F, Ratnanather JT, Younes L, Bakker A, Gallagher M, Albert M, Miller MI (2019) Cortical thickness atrophy in the transentorhinal cortex in mild cognitive impairment. Neuroimage Clin 21:101617. 
8. Tward DJ, Brown T, Patel J, Kageyama Y, Mori S, Troncoso JC, Miller MI (2018) Quantification of 3D tangle distribution in medial temporal lobe using multimodal image registration and convolutional neural networks. Alzheimers Dement 14(7):1291.
9. Soldan A, Pettigrew C, Cai Q, Wang J, Wang M-C, Moghekar A, Miller MI, Albert M, BIOCARD Research Team (2017) Cognitive reserve and long-term change in cognition in aging and preclinical Alzheimer’s disease. Neurobiol Aging 60:164-172.
10. Tward DJ, Sicat CS, Brown T, Bakker A, Gallagher M, Albert M, Miller MI (2017) Entorhinal and transentorhinal atrophy in mild cognitive impairment using longitudinal diffeomorphometry. Alzheimers Dement (Amst) 9:41-50.
11. Younes L, Albert M, Miller MI, BIOCARD Research Team (2014) Inferring changepoint times of medial temporal lobe morphometric change in preclinical Alzheimer’s disease. Neuroimage Clin 5:178-187.
12. Bakker A, Kirwan CB, Miller M, Stark CE (2008) Pattern separation in the human hippocampal CA3 and dentate gyrus. Science 319(5870):1640-1642.
13. Beg MF, Miller MI, Trouve A, Younes L (2005) Computing large deformation metric mappings via geodesic flows of diffeomorphisms. Int J Comput Vis 61(2):139-157.
14. Csernansky JG, Wang L, Swank J, Miller JP, Gado M, McKeel D, Miller MI, Morris JC (2005) Preclinical detection of Alzheimer’s disease: hippocampal shape and volume predict dementia onset in elderly. Neuroimage 25(3):783-792.
15. Grenander U, Miller MI (1998) Computational anatomy: an emerging discipline. Quarterly of Applied Mathematics 56:617-694.
16. Christensen GE, Rabbitt RD, Miller MI (1996) Deformable templates using large deformation kinematics. IEEE Trans Image Process 5(10):1435-1447.
17. Snyder DL, Miller MI (1991) Random Point Processes in Time and Space, (Springer Verlag, New York), pp 1-481.
18. Snyder DL, Miller MI, Thomas LJ, Politte DG (1987) Noise and edge artifacts in maximum-likelihood reconstructions for emission tomography. IEEE Trans Med Imaging 6(3):228-238.
19. Sachs MB, Young ED, Miller MI (1983) Speech encoding in the auditory nerve: implications for cochlear implants. Ann N Y Acad Sci 405(1):94-113.